species:   Artha
pid:       MI0001003
parent:    ath-MIR393a
paralog:   
locus:     2:16652101-16652233
matures:   ['UCCAAAGGGAUCGCAUUGAUCC', 'AUCAUGCUAUCUCUUUGGAUU']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 2:16652101-16652233

0 out of bounds
41 alignments
41 proper strand
33 stranded perfect matches

 ***********************                                                                                     *********************** 
AGAGGAAGGAUCCAAAGGGAUCGCAUUGAUCCUAAUUAAGGUGAAUUCUCCCCAUAUUUUCUUUAUAAUUGGCAAAUAAAUCACAAAAAUUUGCUUGGUUUUGGAUCAUGCUAUCUCUUUGGAUUCAUCCUUC
.(((((.((((((((((((((.((((.(((((.(((((((((((.......(((.(((........))))))........)))).........)))))))..))))))))).)))))))))))))).))))).
----------UCCAAAGGGAUCGCAUUGAUCC----------------------------------------------------------------------------------------------------- l=22 a=0 c
--------------------------------------------------------------------------------------------------------AUCAUGCUAUCUCUUUGGAUU-------- l=21 a=3 c*
---------------------------------------------------------------------------------------------------------------UAUCUCUUUGGAUUCAUCCUU- l=21 a=23 ma
---GGAAGGAUCCAAAGGGAUCGC------------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

---GGAAGGAUCCAAAGGG------------------------------------------------------------------------------------------------------------------ l=16 a=1 
----------UCCAAAGGGAUCGCAUUGAUu------------------------------------------------------------------------------------------------------ l=21 a=1 
----------UCCAAAGGGAUCGCAUUGAUCu----------------------------------------------------------------------------------------------------- l=22 a=1 
--------------------------------------------------------------------------------------------------------AUCAUGCUAUCUCUUUGGAUU-------- l=21 a=3 (c*)
---------------------------------------------------------------------------------------------------------UCAUGCUAUCUCUUUGGAUU-------- l=20 a=3 
---------------------------------------------------------------------------------------------------------UCAUGCUAUCUCUUUGGAUUCAUCCUU- l=27 a=1 
---------------------------------------------------------------------------------------------------------------UAUCUCUUUGGAUUCAUCCUU- l=21 a=23 (ma)
---------------------------------------------------------------------------------------------------------------UAUCUCUUUGGAUcCAUCCUU- l=21 a=1 
---------------------------------------------------------------------------------------------------------------UAUCUCUUUGGAUUCAUCCUc- l=21 a=2 
---------------------------------------------------------------------------------------------------------------UAUCUCUUUGGAUUCAUCCUa- l=21 a=1 
---------------------------------------------------------------------------------------------------------------UAUCUCcUUGGAUUCAUCCUU- l=21 a=1 
------------------------------------------------------------------------------------------------------------------CUCUUUGGAUUCAUCCUU- l=18 a=2 
------------------------------------------------------------------------------------------------------------------CUCUUUGGAUUCAUCCUc- l=18 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111110
fn-111
